PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008697
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 299aa    MW: 33144.2 Da    PI: 7.0908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008697genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068127149123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  Cla008697 127 YECKTCNRTFPSFQALGGHRASH 149
                99**********99999998887 PP
2zf-C2H213.80.00018198220123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  Cla008697 198 HECSICGLEFTSGQALGGHMRRH 220
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.63E-6125155No hitNo description
PfamPF139122.7E-13126151IPR007087Zinc finger, C2H2
SMARTSM003550.052127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.843127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576678.59E-6194222No hitNo description
PfamPF139124.7E-12197222IPR007087Zinc finger, C2H2
SMARTSM003550.015198220IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785198225IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
METPEEFVGS NDQIHNIVAV KGRRNKRLRL LSSGPDATSS SSCGGADDFP AASSSISGDT  60
NNLVIDDDHH EISTEEEEDM ANCLILLAQG DSHRRPRQIL QDPLKIDKIT AKRLNFQMSK  120
TTGFYVYECK TCNRTFPSFQ ALGGHRASHK KPKPIAAVPT VEESEEPQLI KIATPPIQIP  180
TKAVIRTNFQ IQKGGKVHEC SICGLEFTSG QALGGHMRRH RATTTVSGAQ QVIVATNTEH  240
NHHHHHRNSS GDQRKERNIL ELDLNLPAPE EDLRETKFQF TATPQTIVFS APTLVDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466979.11e-132PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-55ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A1S3CSG91e-130A0A1S3CSG9_CUCME; zinc finger protein ZAT5-like
STRINGXP_008466979.11e-131(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-59C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]