PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008710
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 288aa    MW: 33052.3 Da    PI: 8.4467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008710genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl
        Cla008710 14 KGPWSPEEDSKLKHYIETYGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.81e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
        Cla008710  69 GEFSAEEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.954962IPR017930Myb domain
SuperFamilySSF466892.6E-2711109IPR009057Homeodomain-like
SMARTSM007174.2E-121364IPR001005SANT/Myb domain
PfamPF002494.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-241569IPR009057Homeodomain-like
CDDcd001674.92E-91662No hitNo description
PROSITE profilePS5129421.86963117IPR017930Myb domain
SMARTSM007171.3E-1267115IPR001005SANT/Myb domain
PfamPF002491.7E-1169111IPR001005SANT/Myb domain
CDDcd001677.33E-970113No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKHYIE TYGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSAEEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGM  120
VSSSSSNTTN YTPQAEIIKK TESLSPQSHQ NPSFDYQLLS NNNYDPLSSS LSTNSIPLFN  180
YCNPISSGSC LLTNPFDQNF YETLKHNQMQ MGFELEFSGL NSINFNNGFD EKMMMQQQIN  240
NSNNNNQGYI GNCLEGNAMK EEVEEVMEQK KKKKKREIME EKYHCYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25111174108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275KKKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657019.11e-137PREDICTED: transcription factor RAX1-like
TrEMBLA0A1S3CNN71e-130A0A1S3CNN7_CUCME; transcription factor RAX1-like
STRINGXP_004160092.11e-132(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-77myb domain protein 36