PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008721

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 182aa MW: 20185.6 Da PI: 5.3317

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008721	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.5	3.1e-31	38	105	8	71
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....s 71 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg + sa Cla008721 38 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKDIASAsldfP 105 59********************************************************5555533332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-27	38	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.43	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MGSKNMRVKK ATSNSPRNAP KSNSPNASES KLIPSKAPKD RHAKVHGRDR RIRLPPLCAA 60 RVFQLTRELG NKTDGQTVEW LLKKAEPSII ALTGKDIASA SLDFPGCKPF DPTSSNLSTT 120 TSCFEEETFG VNNYAFPMVN ECIPLPNYEF DLVSDFDMEL FAHHIATLQE VAENSEQEDD 180 DD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681935	0.0	LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465370.1	1e-118	PREDICTED: transcription factor TCP7
TrEMBL	A0A1S3CNQ2	1e-116	A0A1S3CNQ2_CUCME; transcription factor TCP7
STRING	XP_008465370.1	1e-117	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-28	TCP family protein