PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008771

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SRS

Protein Properties

Length: 388aa MW: 43216.5 Da PI: 9.4313

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008771	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25.2	4.5e-08	50	85	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C+ CGn a+ C +e C+ CC + C hv Cla008771 50 KPKCRVCGNVARSRCPYESCKSCCARNQNPCYIHVL 85 568*******************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-5	52	85	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MAAPSPTVSN NSSDTATTTA SAVTANVAVS SNHLANRTGT PPKTLRGLNK PKCRVCGNVA 60 RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPTSSP LFDKQSPDPS SSGTSHRVAS 120 LRQLSNNFSQ FNNVQIPLRS RKPLTRKDAA AINEWRFSKL REFRERNIEA ENEAFDRYMQ 180 NVNLLEEVFS MRSMIDGSLK DGPSINSSTE ANPEEMIHGL KLKLGSNPVR SDNSRKRIRE 240 IVEDGLRKFK KVKATDNVDE VTDHAEADKA ADQTNLNDGC KTVKGWHAKR ARALGDLIDK 300 LNKARNEEDL KSCLAMKHQL FNQHITTSSQ TESEETDTSK EQVIKKDLDS RKELGYSLPK 360 LINKTNIDQE TLNQIDAHFS SLKQIGNL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MAAPSPTVSN NSSDTATTTA SAVTANVAVS SNHLANRTGT PPKTLRGLNK PKCRVCGNVA  60
RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPTSSP LFDKQSPDPS SSGTSHRVAS  120
LRQLSNNFSQ FNNVQIPLRS RKPLTRKDAA AINEWRFSKL REFRERNIEA ENEAFDRYMQ  180
NVNLLEEVFS MRSMIDGSLK DGPSINSSTE ANPEEMIHGL KLKLGSNPVR SDNSRKRIRE  240
IVEDGLRKFK KVKATDNVDE VTDHAEADKA ADQTNLNDGC KTVKGWHAKR ARALGDLIDK  300
LNKARNEEDL KSCLAMKHQL FNQHITTSSQ TESEETDTSK EQVIKKDLDS RKELGYSLPK  360
LINKTNIDQE TLNQIDAHFS SLKQIGNL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022923586.1	0.0	uncharacterized protein LOC111431225
TrEMBL	A0A1S3BKF8	0.0	A0A1S3BKF8_CUCME; uncharacterized protein LOC103490821
STRING	XP_008448750.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-91