PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008795
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 196aa    MW: 21682.7 Da    PI: 6.0114
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008795genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-053860123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ Cg+ F++   L  H+++H
  Cla008795 38 YNCTFCGREFRSAQALGGHMNVH 60
               89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-63565No hitNo description
Gene3DG3DSA:3.30.160.603.0E-43763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00363860IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-73861IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7593865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MWNPNQAHRD EDDDSWEIRA FAEDTGNIMG TTWPPRFYNC TFCGREFRSA QALGGHMNVH  60
RRDRVRFHHQ TQSNSIQPIS ASFTIPAPKL IYNESDGVCF LYQLPNENID FLNSITSSSA  120
CLQSSSAATQ YPSNSPTVSS LQTLKSSGEL RGGTSSSSSH CSHMSSKGDE SLISVDDHGD  180
EKLDLELRLG HRASPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113360229superman protein
2l1o_A2e-113360229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533350.0HM453335.1 Cucumis sativus palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148758.11e-112PREDICTED: transcriptional regulator SUPERMAN
TrEMBLE2IBP91e-110E2IBP9_CUCSA; Palmate-like pentafoliata 1 transcription factor (Fragment)
STRINGXP_004164417.11e-111(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.18e-32C2H2 family protein