PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008839
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 405aa    MW: 43190.6 Da    PI: 6.9008
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008839genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.13e-21299361163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+e+kr+rrkq+NRe+ArrsR+RK+ae++eL+ ++++L++eN +L++e+++++  +++l se+
  Cla008839 299 EREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSDYEQLLSEN 361
                89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.6E-29498IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.5E-45137264No hitNo description
Gene3DG3DSA:1.20.5.1705.2E-17292358No hitNo description
PfamPF001708.5E-20299361IPR004827Basic-leucine zipper domain
SMARTSM003381.9E-22299363IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.059301364IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-11302358No hitNo description
CDDcd147027.12E-23304354No hitNo description
PROSITE patternPS000360306321IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSGSEMEKPP KDKETKTPPP TTTTQEQTTT TSAGTVNPDW SGFQAYSPIP PHGFLASSPQ  60
AHPYMWGVQH IMPPYGTPPH PYVAMYPPGG IYAHPSIPPG SYPFSPFTMP SPNGITEASG  120
NTAGSLEGDV KPPEVKEKLP IKRSKGSLGS LNMITGKNNE LGKASGTSAN GAYSKSAESA  180
SEGTSEGSDA NSQNESQPKL GSRPDTLEVE VSQNGNSMHG TQNGGSNTQA MAAIPLATAG  240
ASGVVPGPTT NLNIGMDYWG ASSTIPAIRG KVQSTPVAGG LVTAGSRDSI QSQLWLQDER  300
EIKRQRRKQS NRESARRSRL RKQAECDELA HRAEALQEEN ASLRSEVNRI RSDYEQLLSE  360
NASLKERLGE VPGNEEVRAG RKGQRLSNET TQPTESEVVQ VGNKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321RRSRLRK
2315322RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-123LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-123LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448633.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_008448634.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_008448635.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-166BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1S3BK610.0A0A1S3BK61_CUCME; bZIP transcription factor 16
STRINGXP_008448633.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-154basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]