PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008880
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 769aa    MW: 84837.2 Da    PI: 4.7252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008880genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.00025886251355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R++i +++ eLr ++P+ a      K s  + L ++++Y+  Lq
  Cla008880 588 RQQIQDRIKELRGIIPSgA------KCSIDSLLDRTIKYMLFLQ 625
                89***************77......7777779********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-1553139IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.014575624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-5588631IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-4588633IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MAETELGSVL NSICSSNHWS YGVFWTFDQR NSMLLTLEDI WYEEQVGMVA ANMLQQVHML  60
GEGVIGTAAF TGKHQWIFSD ASIGEWNSSM FQDNLEFQQQ FSCGIKTVAV IPVHPHGVIQ  120
FGSTHKIWEN LEFLADARRS LCQVINGGGL TPEKITHMAS STDISHFNEL FTSFVSSANS  180
DDWSLSAMHN NSHTDFTRKS YASFDKQPAF DTSYFSKSSC ENSVLTSSEP LPTSDIREQD  240
AQYPSYSDTN VLDSCRNSVE FGNGSSAFAS VSSGTGSLHV DNVQQSAQLF PMIEGELVES  300
IPSLPDFCNE HLSEDFTMDL PDISLVDDLF QWFASSPENG TNGVTTALNR NVPPVTGVST  360
LASNLVEVNK FVSDSSKASV VSAQSLITNT SQSSEQDNTV IMQNAKDRLF DSLGLGTGYP  420
VGKTWDNIIT DTHGSYSGGC NSMSTCTSKL ATGSMDLPRK RLFWELGIEE LLDGLSNTNS  480
TKSSVENHQS IASRRSKMER LSLDNNPIQL LDPCTSMNLT QSSCMVDRFP CKKEAVPKSQ  540
VSSWIDDSYS TNIGGSILER SHKSEEPAKT CKKRAKPGES NRPRPKDRQQ IQDRIKELRG  600
IIPSGAKCSI DSLLDRTIKY MLFLQSVTKY ADKLKETNKP KLIDQEDGVA VSDKCTMERG  660
GGGVTWAFKV GATPMVCPVI VEDLSSPGQM LVEMLCEERG FFLEIADMIR SYGLTILKGV  720
MEIREDKIWA QFIVEVKLNT NQSITRINVF LSLMELLQQT NIGGTEVAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146200.10.0PREDICTED: transcription factor bHLH157
TrEMBLA0A0A0L1P10.0A0A0A0L1P1_CUCSA; Uncharacterized protein
STRINGXP_004146200.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-50conserved peptide upstream open reading frame 7