PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008890
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 463aa    MW: 51021.9 Da    PI: 8.9666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008890genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13279324454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  A +YI++L
  Cla008890 279 NHVEAERQRRQKLNQRFYALRSVVPNV-----SKMDKASLLADAADYIREL 324
                799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-3420185IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.51E-14273329No hitNo description
PROSITE profilePS5088817.365275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19276343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-19279342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-17281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDDIIISPSS SSPNSTTPTL QQRLQFILHN RPEWWAYSIF WWASKDITGN LIFTWRDGHL  60
RGTRDGGGSG GGGQLISFGF DEVSVDRVGG ADFTNLEWYY TVSITRSYGA VDNVVGRVFD  120
SSAYIWLTAD DDGLHLYECE RVKEARSRGI QTLVFVSTSV GVLELGSSEL IKQDWNLVQY  180
AKSLFGSASS SSFTLFKQKD HVGTGGGGII IQPQAPSCSD VVKKEMSRDG GRGGGGSSSD  240
SLSDNSDGNF MSIVNNNNVD NKRGKRSAKN KTESSLPVNH VEAERQRRQK LNQRFYALRS  300
VVPNVSKMDK ASLLADAADY IRELKSKVQK LESKLKQPQH QTSSSMSNAF DQNRSNILTV  360
EQTMSSTSYA INKSSSSSSS SSNNNNVEVR LMGSEAVVRV QCRDENYPSA RLLNVLRDLG  420
LQVHHASLSS VNDLMLQDVI VRVPHGTALR EKTLKTAILQ RLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-24277341670Transcription factor MYC2
5gnj_B2e-24277341670Transcription factor MYC2
5gnj_E2e-24277341670Transcription factor MYC2
5gnj_F2e-24277341670Transcription factor MYC2
5gnj_G2e-24277341670Transcription factor MYC2
5gnj_I2e-24277341670Transcription factor MYC2
5gnj_M2e-24277341670Transcription factor MYC2
5gnj_N2e-24277341670Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235GGRGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-89LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-89LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023551800.10.0transcription factor MYC2-like
TrEMBLA0A0A0L4Y40.0A0A0A0L4Y4_CUCSA; Uncharacterized protein
STRINGXP_004159750.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-42bHLH family protein