PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008950

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 240aa MW: 25598.1 Da PI: 6.0422

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008950	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	137	158	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k+F+++ L H+r+H Cla008950 137 RCATCNKVFKSWKALFGHLRSH 158 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.642	136	158	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.5E-8	137	160	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEKNTNANVN ANANANMASE TSPDQRHGGE RSPMAASPPP PPARNDDVNN PTPNVVTELP 60 SSVVVAAPES TTTGDLRRRQ TVDATLLDVS SHQHVGGSSD AEQGKKRGRG DGGEQQQQVK 120 AAKKKGELTE VPKGEPRCAT CNKVFKSWKA LFGHLRSHPE RTYRGALPPP TAAELDIRRC 180 QQQLASTLLT VAQQVAASRR GLDIDLNQPS TADDGDSPEK TGGVGFDLNV EPPPESDDEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	GKKRGRG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449156.1	1e-124	PREDICTED: uncharacterized protein LOC103491103
TrEMBL	A0A1S3BLF2	1e-122	A0A1S3BLF2_CUCME; uncharacterized protein LOC103491103
STRING	XP_008449156.1	1e-123	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10202	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	8e-19	C2H2 family protein