PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009053
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 444aa    MW: 49992.7 Da    PI: 5.4227
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009053genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92e-26305389186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW++ ev+ Li +r+++e+++r++ +k+  Wee+s  m++ g++rs+k+Ckekwen+nk++k++  + k     + +tcpyf++l+
  Cla009053 305 RWPQAEVQSLISLRTSLEHKFRATGSKGSIWEEISVEMQKMGYKRSAKKCKEKWENMNKYFKRTIVTGKAS-IANGKTCPYFQELD 389
                8**************************************************************98887775.566679******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-4297362IPR009057Homeodomain-like
PROSITE profilePS500907.213298362IPR017877Myb-like domain
PfamPF138372.2E-20304389No hitNo description
CDDcd122031.40E-28304368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDLFTGDHRI PSSDNFPQHV APFPDPTDLL YAAPSAVFPP ADIITHLSNP PPPPQKLRPI  60
RCNGRSPAGS QAENIFDGAL RSFQCVSSSP EGGFSGDQLC VANIDPCQYF DSSAKDDKPE  120
VKDNGGFGDI IGNDYFSEEE TKNGGSGAAI AAENLSRSRE GPQLDDDSCS TSDGVDGVFS  180
TKKHLSHKRK RTRRSLEHFV ENLVMKVMDK QEEMHRQLID MIEKKEKERT VREEAWKQRE  240
IERMRRDEEL RAQETSRSLA IISLIQNLLG HEIQISRPVE NQCTEEDGGE SSIQKELKSD  300
PSGRRWPQAE VQSLISLRTS LEHKFRATGS KGSIWEEISV EMQKMGYKRS AKKCKEKWEN  360
MNKYFKRTIV TGKASIANGK TCPYFQELDI LYRNGVVNTG AVFDSTNTEN NSKAERSIDP  420
FHEEAFVEGE SEHIKQEALD MVQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347355KRSAKKCKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819290.0LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139609.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A0A0LYK70.0A0A0A0LYK7_CUCSA; Uncharacterized protein
STRINGXP_004139609.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.15e-54Trihelix family protein