PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009063
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 231aa    MW: 25230.9 Da    PI: 4.5349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009063genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-192674355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++l+g
  Cla009063 26 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAAIAYDRAARSLRG 74
               67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.4682582IPR001471AP2/ERF domain
SMARTSM003805.0E-342588IPR001471AP2/ERF domain
CDDcd000184.05E-292581No hitNo description
PRINTSPR003673.5E-82637IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-212683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-282682IPR001471AP2/ERF domain
PfamPF008473.7E-112874IPR001471AP2/ERF domain
PRINTSPR003673.5E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSPSPSKPKR KQQPPPPPAE PTPHRFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE  60
AAIAYDRAAR SLRGSLARTN FLYSDSPPPP PPPSSASIYP DQPPLFLPLL QPPPPPLFHQ  120
FPPAGDSPSG IFSGECDGGA ELPPFPPAIS SESENCDYNY NYNYGLMESQ NVGFECFDQS  180
SIGIEACLGF DSSSEYVHNP MYGSMPAVSD AGAADFQSPA ANFYFPPSSD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1825811471Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151396.11e-106PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1S3AU891e-102A0A1S3AU89_CUCME; ethylene-responsive transcription factor LEP
STRINGXP_004151396.11e-105(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-22ERF family protein