PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009130
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 480aa    MW: 53829.8 Da    PI: 6.727
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009130genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-1669113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rW +eE+e++++a k++G + W+ I +++g ++t+ q++s+ qk+
        Cla009130  69 RERWKEEEHEKFIEALKLYGRD-WRQIEEHVG-TKTAVQIRSHAQKF 113
                      78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-1563118IPR009057Homeodomain-like
PROSITE profilePS5129421.51964118IPR017930Myb domain
TIGRFAMsTIGR015575.3E-1667116IPR006447Myb domain, plants
SMARTSM007172.1E-1368116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-969109IPR009057Homeodomain-like
PfamPF002492.6E-1369112IPR001005SANT/Myb domain
CDDcd001672.36E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLYDRPMHHF LLANSGNINM NTGGDLCSND ISSAAYEPTV TPDQHSSGNA QLKEFSPKVR  60
KPYTITKQRE RWKEEEHEKF IEALKLYGRD WRQIEEHVGT KTAVQIRSHA QKFFSKVTRN  120
SNGCSTSSVG CIEIPPPRPK RKPAHPYPRK EVPHSHKASP ISELTRSLSP QLSEKECQSP  180
TSIVVSASGS DMLMFTDSRI HHDSGSPDSS IPSTEPNSSL LDNESPTAAP GTENSIPHEK  240
IPTNLELFTK DDMIEKDDST KEVSIQSLKL FGRTVLITDP HRQTPIIENC TPEADRKPGE  300
NQKQVSPWNS MVMESSTRNT ECTWNHGAFY FIQLNSGDSK QGPGSAVPVS WWSSYGSYPL  360
SFVHCFKQAD LDPNQVDDKE THKDQSWCGS NTGSVNSAEN GDKVGENDIQ SCRLFHNNRD  420
RDSVSKDELI GKALSSELIS SHEKNTKGFV PYKRCMTERA TQSHTITEAE REEKRIRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818940.0LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655141.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A0A0KPX50.0A0A0A0KPX5_CUCSA; Uncharacterized protein
STRINGXP_008463161.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-52MYB_related family protein