PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009182

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 172aa MW: 18645.2 Da PI: 8.4917

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009182	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9e-46	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Cla009182 17 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAE 116 7**********************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.474	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-45	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKTENGRKQG GGTGAAPCAA CKLLRRRCGE ECVFAPYFPA DQPHKFANVH KVFGASNVNK 60 MLQELPIHQR GDAVSSLVYE ANARVRDPVY GCVGAISSLQ QQIDALQTQL ALAQAEVVHL 120 RVRQTAPFSN YGLSPTSPSN SGSPSSRLMG SQSRPMFEMD MVVDQAMGDS MW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	16	118	10	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	16	118	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681931	1e-136	LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049.
GenBank	LN713266	1e-136	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145462.1	1e-108	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	6e-72	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0A0LYG0	1e-107	A0A0A0LYG0_CUCSA; Uncharacterized protein
STRING	XP_004145462.1	1e-107	(Cucumis sativus)
STRING	XP_004164216.1	1e-107	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-56	LOB domain-containing protein 4