PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009235
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 311aa    MW: 34297.1 Da    PI: 6.6243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009235genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.1e-34146204159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp+vv++tYeg+H+h+
  Cla009235 146 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQ 204
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-36131206IPR003657WRKY domain
SuperFamilySSF1182903.92E-30138206IPR003657WRKY domain
PROSITE profilePS5081132.96141206IPR003657WRKY domain
SMARTSM007741.2E-40146205IPR003657WRKY domain
PfamPF031061.7E-27147204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGNSGLLFSD AIIPNNNNMF DFPFIDSTDS SSSSSFKPST FLDLLATQDY TPSLFDLFSP  60
PPPPPPPPPP PPPSSAVPES SEVLNTPPTP NSSSVSCSST ERLLDADDAD RDKSPFNKQL  120
KAKKKNQKRG REPRFAFMTK SEVDHLDDGY RWRKYGQKAV KNSPYPRSYY RCTTAGCGVK  180
KRVERSSDDP SVVVTTYEGQ HTHQSPIMPR GATSAGAAAF ASPQPPLVFP QPQLFRNHHQ  240
QYTYAPAPPV DVVTCGRVFD PVFHSFGGDE RRRIDGITCS NSDSFQDHGL LQDMIVPSSN  300
SLQIPEEDKQ N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-31136206777Probable WRKY transcription factor 4
2lex_A9e-31136206777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6835181e-121LN683518.1 Cucumis melo genomic scaffold, unassembled_sequence31001.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467077.11e-145PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 48
SwissprotO229003e-51WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1S3CSP91e-143A0A1S3CSP9_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 48
STRINGXP_008467077.11e-144(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]