PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009439

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 202aa MW: 23208 Da PI: 4.6888

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009439	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.7	7e-34	11	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++++++Pw+L+ k+ +e ++wyf+s++ r+t++gyW+ g+d +vls+ ++e+ Cla009439 11 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLNLFTYDPWELEGKALGEGNRWYFYSRKID--------VRVTDNGYWNPLGRDDPVLSTaTSEV 101 79***********************999.99**********977778899**9866........599************9978899 PP NAM 100 vglkktLvfykgrapkge.ktdWvmheyrl 128 vg+kk + f+ ++a g kt+W+mheyrl Cla009439 102 VGMKKYFLFHVQDAAAGPlKTNWIMHEYRL 131 ******765555544*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-45	7	165	IPR003441	NAC domain
PROSITE profile	PS51005	43.777	11	166	IPR003441	NAC domain
Pfam	PF02365	1.1E-21	12	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAAADSQNFN LPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLNLFT YDPWELEGKA 60 LGEGNRWYFY SRKIDVRVTD NGYWNPLGRD DPVLSTATSE VVGMKKYFLF HVQDAAAGPL 120 KTNWIMHEYR LADTAAAAAS SSSSSRRRGR PKRDYSKWVL CRVYERDEEK EEEEDGAELS 180 CLDEVFLTLD DLDEISLPNR IQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-34	8	172	17	174	NAC domain-containing protein 19
3swm_B	1e-34	8	172	17	174	NAC domain-containing protein 19
3swm_C	1e-34	8	172	17	174	NAC domain-containing protein 19
3swm_D	1e-34	8	172	17	174	NAC domain-containing protein 19
3swp_A	1e-34	8	172	17	174	NAC domain-containing protein 19
3swp_B	1e-34	8	172	17	174	NAC domain-containing protein 19
3swp_C	1e-34	8	172	17	174	NAC domain-containing protein 19
3swp_D	1e-34	8	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	153	RRGRPKRD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	2e-92	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	2e-92	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455246.1	1e-117	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	6e-83	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1S3C0L6	1e-116	A0A1S3C0L6_CUCME; NAC domain-containing protein 104
STRING	XP_008455246.1	1e-117	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-76	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]