PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009616

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HSF

Protein Properties

Length: 192aa MW: 22272.2 Da PI: 7.638

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009616	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	98.3	7.7e-31	12	123	2	102
HHHHHHHHHCTG....................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTS CS HSF_DNA-bind 2 Flkklyeilede....................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskeki 78 Fl+k+y++le++ ++++sw+++g+ f+v+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk+++++ Cla009616 12 FLSKTYDLLEEAagsfhfkaadqeeeeeeekdGGSRIVSWNAEGSGFIVWSPADFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSSKR--------- 99 999999999955555555555555666665557899**********************************************9998......... PP EEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 79 weFkhksFkkgkkellekikrkks 102 weFkh++F++g++++l +i rkk Cla009616 100 WEFKHEKFQRGNRHMLVEIVRKKC 123 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.3E-34	4	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.0E-37	8	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.3E-28	12	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.48E-24	45	121	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MQSSRTRNPA PFLSKTYDLL EEAAGSFHFK AADQEEEEEE EKDGGSRIVS WNAEGSGFIV 60 WSPADFSELL LPKYFKHNNF SSFIRQLNTY GFKKTSSKRW EFKHEKFQRG NRHMLVEIVR 120 KKCEPSVFPA FLRSSHEGTV TMAVDQENGD HLLLMEENSN LRRQKLELQA QIAKFKALHI 180 RLLDCLGQCI EK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-13	48	121	36	120	Heat shock factor protein 1
5d5u_B	1e-13	48	121	45	129	Heat shock factor protein 1
5d5v_B	1e-13	48	121	45	129	Heat shock factor protein 1
5d5v_D	1e-13	48	121	45	129	Heat shock factor protein 1
5hdg_A	1e-13	48	121	26	110	Heat shock factor protein 1
5hdn_A	1e-13	48	121	26	110	Heat shock factor protein 1
5hdn_B	1e-13	48	121	26	110	Heat shock factor protein 1
5hdn_C	1e-13	48	121	26	110	Heat shock factor protein 1
5hdn_D	1e-13	48	121	26	110	Heat shock factor protein 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-132	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-132	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439862.1	1e-124	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A1S3AZS2	1e-122	A0A1S3AZS2_CUCME; heat stress transcription factor B-2a-like
STRING	XP_008439862.1	1e-123	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11357	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	7e-38	heat shock transcription factor B2A