PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009626
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 434aa    MW: 49380.5 Da    PI: 6.4228
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009626genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-19185281296
                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                +k+l++sdv+++gr+vlpk+ aee+   +  +e+++++++d ++ r+W++k++y  +++s++yvl+ ++ +Fv++ngL  gD+++++  ++++++l+v v
  Cla009626 185 KKELKNSDVGSLGRIVLPKREAEENlpFLTDKEGIQIVVRDVNSiRKWTMKYKYwaNNRSRMYVLE-NTGDFVRQNGLLMGDSMTLY--EDDCKNLYVAV 281
                6899***********************555568899*****6666********9877888889999.********************..56888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-25178281IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-22183279No hitNo description
SuperFamilySSF1019362.88E-21183281IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.405184285IPR003340B3 DNA binding domain
SMARTSM010193.1E-20184285IPR003340B3 DNA binding domain
PfamPF023626.0E-16186281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDDHHNPHHH HHHHHHHELP PFPSAAAILH SPPPPPPQNS CYLPPSLSQT CLGFSSSAPQ  60
SYFYSNPPPL HEQLPSHFPP SSTFLTYGFN EPTNSLFPKD EGRRAMDAWS TKVARTNRRL  120
ARQRTLTLTR TTSSSSSAAY NGCYNDEYSK GLTITHFPNT DPSHNNRNLF TFCTPDNKIL  180
RMLLKKELKN SDVGSLGRIV LPKREAEENL PFLTDKEGIQ IVVRDVNSIR KWTMKYKYWA  240
NNRSRMYVLE NTGDFVRQNG LLMGDSMTLY EDDCKNLYVA VEKGENHSRM EENNKQQQQQ  300
QQQCGNLSNM EIKDEEEDAS LALLIEELKH KADDDPHAPP CCNDYSYFTA ATMMGGATIK  360
GNYNNINNNN NATNTNYKEV MEDLQGINNN NNNNNNNNNN GNGFEDCFGG LDTLPEVTGF  420
KFPLFDYFSN NDRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-451742813110B3 domain-containing transcription factor LEC2
6j9c_D2e-451742813110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818754e-34LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132624e-34LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658520.11e-179PREDICTED: B3 domain-containing transcription factor LEC2
TrEMBLA0A0A0KND01e-110A0A0A0KND0_CUCSA; Uncharacterized protein
STRINGXP_008441082.12e-74(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-47B3 family protein