PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009627
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 238aa    MW: 25835.9 Da    PI: 8.8403
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009627genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.65e-371977361
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + +kcprCds ntkfCyynnyslsqPry+CkaCrryWt+GG lrnvPvGgg+rk k+ 
  Cla009627 19 PQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKACRRYWTQGGILRNVPVGGGCRKGKRP 77
               5789***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.5E-322176IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.2482276IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-232376IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQYQDLRSKS LQVQDQVQPQ PQKCPRCDSL NTKFCYYNNY SLSQPRYLCK ACRRYWTQGG  60
ILRNVPVGGG CRKGKRPKQS SQSSNSIVKS VQPSTSLPPP PQIVPLSLTT TTTEHVIFSG  120
TPVITPSTFF NPGGELLSSS SWINSFGSSQ GQSQIQPPEI IYEMMDQSSG KAATSSSSTV  180
AGWTESYINN SISNHMAVAG DAIVWPAGNN NAANVTTAAA TTTINQWPDY MPGFCPPP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818756e-93LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132626e-93LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439844.11e-103PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLA0A1S3B0F11e-101A0A1S3B0F1_CUCME; dof zinc finger protein DOF1.4-like
STRINGXP_008439844.11e-102(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.18e-31OBF binding protein 4