PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009648
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 212aa    MW: 24355.7 Da    PI: 9.8229
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009648genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.5e-32461861128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sgy 82 
                lp+G++FhP+d++++ e+L++kv+g+k      +   +    +++   +i++++P+ Lp  +k++ +  +fF++ +k+y+ g+rk+r++k       + +
  Cla009648  46 LPAGVKFHPSDQQIL-EHLEAKVKGDKpkihplI---HqfipTLEGEdGICYTHPQYLP-GMKKDGEIRHFFHRPSKAYTAGTRKRRKVKteeeegrDTR 140
                799**********99.99*********5554331...132223444435**********.666767777******************7333455444778 PP

        NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                W++tgk+++v    g l+g kk+Lv+y   g+ +k+ekt+W+mh+y+l
  Cla009648 141 WHKTGKTRPVGG--GGLMGFKKILVLYsnYGNPRKAEKTNWIMHQYHL 186
                **********87..889**********6557999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3241205IPR003441NAC domain
PROSITE profilePS5100530.92146205IPR003441NAC domain
PfamPF023651.7E-1547186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEWLNEKKEG VWSWDAGNDA FGSRICPSCG HPVEGGFKVV EDWGRLPAGV KFHPSDQQIL  60
EHLEAKVKGD KPKIHPLIHQ FIPTLEGEDG ICYTHPQYLP GMKKDGEIRH FFHRPSKAYT  120
AGTRKRRKVK TEEEEGRDTR WHKTGKTRPV GGGGLMGFKK ILVLYSNYGN PRKAEKTNWI  180
MHQYHLGVTE QEKDGQWVAS KVFFQLHPRQ TN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818755e-81LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132625e-81LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439804.11e-109PREDICTED: NAC domain-containing protein 10 isoform X1
SwissprotF4HY614e-88NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A1S3AZ731e-108A0A1S3AZ73_CUCME; NAC domain-containing protein 10 isoform X1
STRINGXP_008439804.11e-109(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.12e-79NAC domain containing protein 10