PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009662
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 224aa    MW: 25587.6 Da    PI: 6.3148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009662genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-2067117255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Cla009662  67 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFNTAEEAALAYDKAALRIRG 117
                8********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-3266126No hitNo description
Gene3DG3DSA:3.30.730.103.6E-3266125IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2467127IPR016177DNA-binding domain
PfamPF008477.0E-1567117IPR001471AP2/ERF domain
PROSITE profilePS5103223.72367125IPR001471AP2/ERF domain
SMARTSM003803.7E-3867131IPR001471AP2/ERF domain
PRINTSPR003673.8E-116879IPR001471AP2/ERF domain
PRINTSPR003673.8E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDVLERLPSL GRWVSMGDEA WEELLDGILP VSNTAQSVHE DLKNTPNSHS SFNVDTRRAE  60
KAVATKHYRG VRRRPWGKYA AEIRDSSRKG ARVWLGTFNT AEEAALAYDK AALRIRGPKA  120
HLNFPIETVT EAMGMHFSTK NDHLNSLMPS SFQGHDSISH GSSSITGKRL TREWEDNFEF  180
DIMEFEQPKL KRKTNINNMF YNDFDVFEFQ DLGSDYLDNL LSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2866128466ATERF1
3gcc_A6e-2866128466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439786.11e-151PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A1S3B0A41e-149A0A1S3B0A4_CUCME; ethylene-responsive transcription factor ERF091
STRINGXP_008439786.11e-150(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.15e-30ERF family protein