PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009714
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 405aa    MW: 46890.1 Da    PI: 6.243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009714genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++++ ++sw++ ++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F+kg+ +ll++i+
     Cla009714  14 FLTKTYEMVNDPSTDPVVSWTSGNKSFIVWNPLEFSSDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFEKGRPDLLRNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Cla009714 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-37497IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.84E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDEAQASSNT LPPFLTKTYE MVNDPSTDPV VSWTSGNKSF IVWNPLEFSS DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFE KGRPDLLRNI HRRKPVHSHS LQNVQGQGLP  120
SPLLDLERKR FKEEIEKLKH TNEKLLLESQ RHEQEHRDLQ LQMQLMKNRF QCMQQQQQTL  180
LSNVAHVLQK PELTIYFVPE SDSHDRKRRL ATVTYYYNES SAEDDLAEHS HSISKQQVDY  240
SSTSDLNMEQ LDQLDSFLTF WERTIHDVDR TIILPNLKSN QTKRDIQSPP TPLQLDRNHQ  300
SKSHVIDMNS EPVGSIASDS IASRKEAGET TVIARNGAND VFWEQFLTEN PGSSDLPKVA  360
SEGNESDNGR KNESKPRGFG KLWWTGNKIN NLAEQMEHLT PTEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-22410319129Heat shock factor protein 1
5d5v_B6e-22410319129Heat shock factor protein 1
5d5v_D6e-22410319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439712.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A1S3B0390.0A0A1S3B039_CUCME; heat stress transcription factor A-4c-like
STRINGXP_008439712.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-95heat shock transcription factor A4A