PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009758
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28475.9 Da    PI: 8.0444
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009758genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.86.7e-192472149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+i n+  r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + +
  Cla009758 24 KKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
               6789999*************************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.3061676IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-291675IPR002100Transcription factor, MADS-box
CDDcd002653.42E-311785No hitNo description
SuperFamilySSF554551.44E-251798IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-191838IPR002100Transcription factor, MADS-box
PfamPF003197.0E-232572IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-193853IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-195374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDSAAPAVAG NKKQTKGRQK IEMKKIVNED DRLITFSKRR SGIYKKASEL ATLCGAEVGV  60
VVFSPAGKPF SFAHPCIESV ANKFLNDDKN KNNNSKENNN NNTNNATHPL VEAHRRVRIN  120
ELNQQHNQLL SQLDAEKEKG KALEKLKKVR GNGRGWWETP AEELGIEELQ EVDASLGELY  180
QNVCHQLKQR GVIGSCSYNN YNDNPSMGFT NEFGEETIPF NILGNVPPPF LPPPYLPPHP  240
HFDFGGQHQH HHHP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-101LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-101LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658286.11e-116PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0A0KNT71e-114A0A0A0KNT7_CUCSA; Uncharacterized protein
STRINGXP_008439651.11e-121(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-29AGAMOUS-like 61