PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009826
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 799aa    MW: 87302.7 Da    PI: 6.126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009826genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18563357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cla009826  5 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
               6789*****************************************************97 PP
2START163.21.9e-511543612204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g+++l++++++
  Cla009826 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWYRDCRCLNVLSVIPTGngGTVELIYMQTY 252
                68999*****************************************************.8999999999******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf++ Ry+ +l++g++v++++S++  +  p     s +vRae+lpSg+li+ +++g+s +++v+h+dl+ ++++++lr+l++s+ + ++k+
  Cla009826 253 APTTLAAaRDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAgppPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKM 352
                *********************************9998888777899****************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  Cla009826 353 TIAALRHIR 361
                ****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726164IPR001356Homeobox domain
SMARTSM003898.0E-16268IPR001356Homeobox domain
CDDcd000861.04E-16565No hitNo description
SuperFamilySSF466892.35E-16566IPR009057Homeodomain-like
PfamPF000462.9E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-18763IPR009057Homeodomain-like
CDDcd146863.54E-65796No hitNo description
PROSITE profilePS5084824.064144372IPR002913START domain
CDDcd088757.99E-69148364No hitNo description
Gene3DG3DSA:3.30.530.205.3E-22152358IPR023393START-like domain
SMARTSM002348.8E-46153363IPR002913START domain
PfamPF018529.0E-49154361IPR002913START domain
SuperFamilySSF559613.43E-36154365No hitNo description
PfamPF086704.3E-20689798IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QSVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLH NASGTTTDNS  120
CESVVMSGQP QQQQNPNPQH SNRDVNNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR LSWYRDCRCL NVLSVIPTGN  240
GGTVELIYMQ TYAPTTLAAA RDFWTMRYTT SLEDGSLVVC ERSLSTSSGG PAGPPPSTFV  300
RAEMLPSGYL IRACEGGGSI IHIVDHIDLD VWSVPEVLRP LYESSKILAQ KMTIAALRHI  360
RQIAQETNGE IQCTGGRQPA VLRTFSQKLC RGFNDAVNGF ADDGWSPMGS DGVEDVTIVI  420
NSSANKFPGS QYNTSLYPSF GGGVMCAKAS MLLQNVPPAL LVRFLREHRS EWADYGVDAY  480
SAASLKASPY AVPCARPGGF PSSQVILPLA PTVEHEEFLE VVRLEGLAFS PEDVALAGRD  540
MYLLQLCSGV DENAVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLDPKT DEPTAARTLD  600
LASTLEVGAN AARSAGETDL SSYNLRSVLT IAFQFTFENH LQENVAAMAR QYVRSVVGSV  660
QRVAMAISPS RLSSSTGLKP LPGSPEALTL ARWICRSYRY IICSSPVSLA LIHVGVELLQ  720
TDSQSGDAML KKLWHHSDAI MCCSVKTNAS AVFTFANQAG LDMLETTLVG LQDIMLDKIL  780
DEAGRKILCS EFPKIMQQV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439554.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotO042920.0ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLA0A1S3AZP60.0A0A1S3AZP6_CUCME; homeobox-leucine zipper protein ATHB-14-like
STRINGXP_008439554.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]