PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009827

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YA

Protein Properties

Length: 200aa MW: 22155.6 Da PI: 9.382

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009827	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.9	2.9e-32	107	163	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF Cla009827 107 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 163 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.2E-35	105	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.843	106	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-27	108	163	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	109	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	111	131	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	140	163	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MASLYNGEAD EQQKYSGSQN HSSSIVNGLS QPTIVTPNQY VTSPQVGAGH AMAPPAYPYP 60 DPYYRSIFTP YDAQPYPPQP YGGQPMVHLQ LMGIQQAGVP LPTDAVEEPV FVNAKQYHGI 120 LRRRQSRAKA ESENKALKSR KPYLHESRHL HALRRARGCG GRFLKSNKNE NHQNEVASGD 180 KSQPNINLNS DRSDLASSEN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-20	106	164	1	59	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-72	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-72	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022925987.1	1e-132	nuclear transcription factor Y subunit A-7
Refseq	XP_022925988.1	1e-132	nuclear transcription factor Y subunit A-7
Refseq	XP_022977923.1	1e-133	nuclear transcription factor Y subunit A-7
Refseq	XP_022977924.1	1e-133	nuclear transcription factor Y subunit A-7
Refseq	XP_023544362.1	1e-132	nuclear transcription factor Y subunit A-7
Refseq	XP_023544363.1	1e-132	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	5e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0A0KIV0	1e-120	A0A0A0KIV0_CUCSA; Uncharacterized protein
TrEMBL	A0A1S4DTP4	1e-120	A0A1S4DTP4_CUCME; LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-7
STRING	XP_008439553.1	1e-121	(Cucumis melo)
STRING	XP_004134622.1	1e-121	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-52	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]