PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009883
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 19748.1 Da    PI: 10.5624
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009883genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-271059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rien + rqvtfskRr g++KK +ELSvLCda++ +i+fss+gkl+ey++
  Cla009883 10 RIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIGLIVFSSNGKLFEYCT 59
               8***********************************************96 PP
2K-box31.11e-11841461173
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                 ++ e+l++ ++ ++k ++ Lq ++ ++  +d ++  l++L  +e++L++sl+++R++K   +
  Cla009883  84 MNDPEELERRVRIMRKDTDDLQLSLQRYTADDFSTFHLRDLDDIENRLQNSLNRVRARKAFSI 146
                5667899999*************************************************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
CDDcd002651.24E-39272No hitNo description
SuperFamilySSF554551.31E-30285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014869.7E-1085145IPR002487Transcription factor, K-box
PROSITE profilePS512976.75287168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGRGKIAIRR IENRTTRQVT FSKRRGGLFK KTHELSVLCD AQIGLIVFSS NGKLFEYCTQ  60
TTCMDQIIRR YQIAIGNRIP EQNMNDPEEL ERRVRIMRKD TDDLQLSLQR YTADDFSTFH  120
LRDLDDIENR LQNSLNRVRA RKAFSIISHV LLLLLLLLLL LLLLLLRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19171169MEF2C
5f28_B7e-19171169MEF2C
5f28_C7e-19171169MEF2C
5f28_D7e-19171169MEF2C
6byy_A6e-19193191MEF2 CHIMERA
6byy_B6e-19193191MEF2 CHIMERA
6byy_C6e-19193191MEF2 CHIMERA
6byy_D6e-19193191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-71LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-71LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658350.11e-95PREDICTED: MADS-box protein FBP24 isoform X2
RefseqXP_011658353.11e-95PREDICTED: MADS-box protein FBP24 isoform X5
SwissprotQ9ATE54e-53FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A1S3AYU57e-90A0A1S3AYU5_CUCME; MADS-box protein FBP24
STRINGXP_004134531.14e-95(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.34e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]