PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009916
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 310aa    MW: 35813.9 Da    PI: 8.1694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009916genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27.1e-062242323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ Cg  F+ + +Lk+H+++H
  Cla009916 22 CQECGAEFRKPAYLKQHMQSH 42
               *******************99 PP
2zf-C2H216.13.3e-054872123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               y C+   C  s++rk++L+rH+  H
  Cla009916 48 YICSvdGCEASYRRKDHLTRHLLQH 72
               899999***************9887 PP
3zf-C2H221.94.6e-07115139123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++Cp   Cgk+F+  s+L++H  +H
  Cla009916 115 FVCPedGCGKVFRYASQLQKHEDSH 139
                89*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.9442047IPR007087Zinc finger, C2H2
SMARTSM003550.0152042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-72141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-113474No hitNo description
Gene3DG3DSA:3.30.160.601.4E-124274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.2244874IPR007087Zinc finger, C2H2
SMARTSM003550.00184872IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
SuperFamilySSF576677.14E-658113No hitNo description
SMARTSM003550.1777102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.13377107IPR007087Zinc finger, C2H2
PROSITE patternPS00028079102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-9109139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-5112140No hitNo description
PROSITE profilePS5015711.074115144IPR007087Zinc finger, C2H2
SMARTSM003552.6E-4115139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SMARTSM003551.5147172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149172IPR007087Zinc finger, C2H2
SMARTSM003554.8175197IPR015880Zinc finger, C2H2-like
SMARTSM0035527206227IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.78E-6215255No hitNo description
Gene3DG3DSA:3.30.160.604.9E-7217255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035512233259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEIGKHNDDG DDKTKNRKSN ICQECGAEFR KPAYLKQHMQ SHSLERPYIC SVDGCEASYR  60
RKDHLTRHLL QHQGIIFKCP IESCNREFAY ISCVNRHLKE CHGGEAPPEE CQKQFVCPED  120
GCGKVFRYAS QLQKHEDSHV KLDSIEACCT EPGCLRIFTN KQCLRAHMQS CHQYIKCEIC  180
GEKKLRKNLK QHLRQKHESE GPLEAIPCRY EGCSKASNLQ QHMKVVHMGQ KPFACCFPGC  240
GMRFGYKHVR DNHEKSGQHV YTNGDFEAAD EQFRSKPRGG RKRICPTVEM LIRKRVTPPS  300
EFDFTMDEEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C1e-132226764314Zinc finger protein 568
5wjq_D1e-132226339285Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2841201e-108EU284120.1 Cucumis sativus C2H2 zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142387.20.0PREDICTED: zinc finger X-linked protein ZXDB
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0A0KV540.0A0A0A0KV54_CUCSA; Uncharacterized protein
STRINGXP_008446968.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-121transcription factor IIIA