PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009931
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 349aa    MW: 38880.1 Da    PI: 10.4036
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009931genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.31.2e-1560142186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  v  L+ea+++++   +r+klk+++We+v++++ ++  f++spk   qCk+k+e+++kry+ + +++ +       ++p++++l+
  Cla009931  60 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARHVsSRANFTKSPKtqtQCKNKIESMKKRYRSESASAAS-------SWPLYHRLH 142
                5*************************************756667776643339***************999997.......49***9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-1958142No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEMKGSPSSP PTSHTSPSLL FNHHHHHHHQ LPPAAAEDNP SPKKTPVSTG GGGDRLKRDE  60
WSEGAVSSLL EAYESKWVLR NRAKLKGHDW EDVARHVSSR ANFTKSPKTQ TQCKNKIESM  120
KKRYRSESAS AASSWPLYHR LHLLLRGNAT LTPPPPPSSH SPPPVILLDP PPPRPRPPPP  180
PPPPFLPPQN SHGSNGVDRI NPKEDGVDNG RGDESDELSE KNKKMVTETD SSTPAIVYSE  240
KEKVAMRPKQ QTKMKNNKKK KGTRLLTTED SLEQIAGSIR WLAEVVVRSE QARMEMIKDI  300
EKMRAEAEAK RGEMDLKRTQ IIANTQLEIA KLFASSTKPL DSSLRIGRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818962e-72LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132642e-72LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023526851.11e-160trihelix transcription factor ASIL1
TrEMBLA0A1S3BGZ01e-124A0A1S3BGZ0_CUCME; LOW QUALITY PROTEIN: trihelix transcription factor ASIL2
STRINGXP_008446967.11e-125(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-89sequence-specific DNA binding transcription factors