PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010119
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 233aa    MW: 25905.9 Da    PI: 6.9717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010119genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001289111123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C k F+++  L  H++ H
  Cla010119  89 FECQYCLKEFTNSQALGGHQNAH 111
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-686116No hitNo description
Gene3DG3DSA:3.30.160.604.4E-488115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.4E-689113IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.40689116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMGKDSLVCN LEEGESGLFS GGSCMEKKVK LFGIELNPAK NYKEEELGRN YKGCCNIGEG  60
DHESVNSSTT VCFERSSEQQ AAIVKQPKFE CQYCLKEFTN SQALGGHQNA HKKERLKKKK  120
MQLQARKATL SYYLQPSFQT TSNNFLYDYP SSPPCFFSDD SSSQISFNQN DAQLIHFDAS  180
LSFLPQQQRS FFTLTPPDMS SGTPNPVVFH SFSSSSSSSS PSCKSLDLQL GLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119ERLKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818962e-49LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132642e-49LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022151218.12e-80zinc finger protein 5-like
TrEMBLA0A0A0KVQ65e-75A0A0A0KVQ6_CUCSA; Uncharacterized protein
STRINGXP_008446260.14e-74(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.14e-14zinc finger protein 5