PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010153

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 254aa MW: 29228.5 Da PI: 4.7988

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010153	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.7e-18	38	91	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ F+ ++++ ++++ ++A+++gL rqV vWFqNrRa+ k Cla010153 38 KKRRLTVDQVRLLEKNFNDENKLEHDRKVQIAEEIGLRPRQVAVWFQNRRARSK 91 45689***********************************************99 PP
2	HD-ZIP_I/II	118.2	4.7e-38	38	129	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+ +qv+lLE++F+ e+kLe++rKv++a+e+gl+prqvavWFqnrRAR ktk++Ekdye+L ++yd+lk++ ++L k ++eL++e+++ Cla010153 38 KKRRLTVDQVRLLEKNFNDENKLEHDRKVQIAEEIGLRPRQVAVWFQNRRARSKTKRIEKDYESLNAEYDKLKNDFDSLLKLNQELKAEVDQ 129 9**************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.3E-17	18	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	33	93	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	36	97	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-15	38	91	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-17	38	91	IPR009057	Homeodomain-like
CDD	cd00086	1.27E-13	38	94	No hit	No description
PRINTS	PR00031	3.2E-5	64	73	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.2E-5	73	89	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.2E-13	93	133	IPR003106	Leucine zipper, homeobox-associated
Gene3D	G3DSA:1.20.142.10	3.7E-4	97	213	IPR004102	Poly(ADP-ribose) polymerase, regulatory domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006471	Biological Process	protein ADP-ribosylation
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDSETTRFLA KAEASSLPCF WVPDSCCSMK GEGNQGGKKR RLTVDQVRLL EKNFNDENKL 60 EHDRKVQIAE EIGLRPRQVA VWFQNRRARS KTKRIEKDYE SLNAEYDKLK NDFDSLLKLN 120 QELKAEVDQL REKWVASEKM KNPFESVGVE AMDSSVTELG KANTKTMVEI LYKVQKESSR 180 QEEGSRSSSK SDGFYSESPA RENQSKSGNF LQDEEDELGY LGKLEDELSA NELMDSFNTF 240 SSIVENQSFC FWSY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-121	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-121	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135200.1	1e-151	PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBL	A0A0A0KVU6	1e-150	A0A0A0KVU6_CUCSA; Homeobox protein
STRING	XP_004155327.1	1e-151	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24616	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-34	homeobox protein 6