PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010220
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 167aa    MW: 19357.4 Da    PI: 9.9291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010220genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-101764655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
               + +E +RR+++++ +++L +l+P+    +sk   + ++ Le A++YIk+Lq
  Cla010220 17 KLIETNRRKEMKELLSTLNSLVPHE---SSKEaRTVVDELEDATNYIKELQ 64
               679*********************7...55555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6641163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-121682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-71764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-41769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-121783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-41865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MANNPIRCVP SSQTDQKLIE TNRRKEMKEL LSTLNSLVPH ESSKEARTVV DELEDATNYI  60
KELQNHIEKL KEKKEKLMGK IKMVELEDGR RNRKKHEETK PNPKLLLQVK AHQLDSTLHI  120
LLTTGSDYHP ILQQILLLLH DNGTDTLHVN QTRVKHRVFH TIVAKVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442634.21e-61PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S3B6603e-60A0A1S3B660_CUCME; transcription factor bHLH118-like
STRINGXP_008442634.11e-60(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2140934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-14bHLH family protein