PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010317

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 331aa MW: 37906.7 Da PI: 7.0637

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010317	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	9e-56	19	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL +kv ++++++ +i e+d++k+ePwdLp ++k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdke+++ ++++v Cla010317 19 LPPGFRFHPTDEELITHYLSRKVLNTNFTA-IAIGEADLNKSEPWDLPGRAKMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDKEIFR-GKRVV 116 79***********************999.88***********99999*************************************.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grapkgek++Wvmhe+rle Cla010317 117 GMKKTLVFYTGRAPKGEKSNWVMHEFRLE 145 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-64	16	171	IPR003441	NAC domain
PROSITE profile	PS51005	59.135	19	171	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
METNLWKTQN ECEEEHLELP PGFRFHPTDE ELITHYLSRK VLNTNFTAIA IGEADLNKSE 60 PWDLPGRAKM GEKEWYFFCV KDRKYPTGLR TNRATESGYW KATGKDKEIF RGKRVVGMKK 120 TLVFYTGRAP KGEKSNWVMH EFRLEGKFPL SPTLILKPAK NEWVICRIFN KSSADKATLN 180 NPFHTQRDSP ALPPLMEYSQ SQTPYNPDPR ASRVTCFSNN QPFNHDRDTK PYTTTSDMLY 240 NFKTNHFSSS SNPPPPPPFS FPNPPPPDSV WTPGNSLVRM LLENQSGSGL MNPKVENISG 300 FSHGIGMMED DHHNPSMASE DPLDLETLWD Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-54	16	174	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-54	16	174	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-54	16	174	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-54	16	174	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-54	16	174	17	171	NAC domain-containing protein 19
3swm_B	8e-54	16	174	17	171	NAC domain-containing protein 19
3swm_C	8e-54	16	174	17	171	NAC domain-containing protein 19
3swm_D	8e-54	16	174	17	171	NAC domain-containing protein 19
3swp_A	8e-54	16	174	17	171	NAC domain-containing protein 19
3swp_B	8e-54	16	174	17	171	NAC domain-containing protein 19
3swp_C	8e-54	16	174	17	171	NAC domain-containing protein 19
3swp_D	8e-54	16	174	17	171	NAC domain-containing protein 19
4dul_A	7e-54	16	174	14	168	NAC domain-containing protein 19
4dul_B	7e-54	16	174	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023551147.1	1e-151	NAC domain-containing protein 79-like
Swissprot	Q9FLJ2	5e-96	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0A0KSA1	1e-131	A0A0A0KSA1_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3C9F2	1e-131	A0A1S3C9F2_CUCME; NAC domain-containing protein 92-like isoform X2
STRING	XP_004171621.1	1e-133	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24620	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-96	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]