PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010331
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 96aa    MW: 10332.5 Da    PI: 8.2928
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010331genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.21.7e-322782359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 +vrY eC+kNhAa +Gg+avDGC+Efm+s g+egt+aal+CaACgCHRnFHRr+v +
    Cla010331 27 SVRYGECQKNHAAGVGGYAVDGCREFMAS-GDEGTTAALTCAACGCHRNFHRRQVGT 82
                 79**************************9.999********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-24193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.8E-302879IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-272979IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8893079IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MRKRQVVLRR SEEPSRETVA SSFTVRSVRY GECQKNHAAG VGGYAVDGCR EFMASGDEGT  60
TAALTCAACG CHRNFHRRQV GTEVVCDCSS SPSNGT
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818891e-110LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132631e-110LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902406.11e-63PREDICTED: mini zinc finger protein 2
SwissprotQ9LJW52e-43MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A1S4E2E93e-62A0A1S4E2E9_CUCME; mini zinc finger protein 2
STRINGXP_008459312.14e-63(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.17e-35mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]