PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010338
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 91aa    MW: 10431.9 Da    PI: 9.3639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010338genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.7e-0721571854
               HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               +  ++Lr+l+P+ + + +  K+s + +L+++++YI++L
  Cla010338 21 ELVSKLRQLVPEiR-HRRPDKVSASKVLQETCNYIRNL 57
               56689*******77.67778899999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.918357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-9776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-81773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-42157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQSS ASRISDDQII ELVSKLRQLV PEIRHRRPDK VSASKVLQET CNYIRNLHRE  60
VDDLSERLSQ LLSTIDADSA EAAIIRSLIM Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818896e-54LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132636e-54LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151201.22e-56PREDICTED: transcription factor PRE6-like
RefseqXP_008459306.12e-56PREDICTED: transcription factor PRE6
SwissprotQ9LJX13e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0A0KXB95e-55A0A0A0KXB9_CUCSA; Transcription regulator
TrEMBLA0A1S3CB295e-55A0A1S3CB29_CUCME; transcription factor PRE6
STRINGXP_008459306.18e-56(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-34bHLH family protein