PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010413
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 201aa    MW: 23274 Da    PI: 5.348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010413genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.71.9e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ l ++++ +G g W++ a+  g++Rt+k+c++rw++yl
        Cla010413 17 KGPWTMEEDLMLMNYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 64
                     79********************************************97 PP
2Myb_DNA-binding54.23.3e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ d++ ++G++ W++Iar ++ gRt++++k++w++
        Cla010413  70 RGNITPEEQLLIMDLHSKWGNR-WSKIARQLP-GRTDNEIKNYWRT 113
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-231067IPR009057Homeodomain-like
PROSITE profilePS5129415.5771264IPR017930Myb domain
SuperFamilySSF466895.72E-3015111IPR009057Homeodomain-like
SMARTSM007171.5E-111666IPR001005SANT/Myb domain
PfamPF002491.6E-151764IPR001005SANT/Myb domain
CDDcd001674.08E-91964No hitNo description
PROSITE profilePS5129424.6965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2468119IPR009057Homeodomain-like
SMARTSM007173.7E-1469117IPR001005SANT/Myb domain
PfamPF002494.0E-1570113IPR001005SANT/Myb domain
CDDcd001674.85E-1174113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGTERLSSSQ DDDEVRKGPW TMEEDLMLMN YIANHGEGVW NSLAKAAGLK RTGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IMDLHSKWGN RWSKIARQLP GRTDNEIKNY WRTRIQKHIK  120
QQGEAETVRD QMISIGSCSE TNYDCSPCNQ VSSFGNVAEP MEISHDYFPS SQGDVEAMGY  180
QQTTNDNYWS MEDLWSMQLL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818903e-82LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132633e-82LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458780.11e-135PREDICTED: myb-related protein 340-like
SwissprotP813919e-82MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S3C8M71e-133A0A1S3C8M7_CUCME; myb-related protein 340-like
STRINGXP_008458780.11e-134(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-80myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]