PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010632
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 293aa    MW: 33579 Da    PI: 5.7085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010632genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.8e-33131052103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+ ++ +isw + +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ +ll++i 
     Cla010632  13 FVLKTYQMVNDPLTDAFISWGSANNSFIVLDPLHFSHTLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQFQLLKNIV 100
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Cla010632 101 RRKQS 105
                   *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.3E-499102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-3510102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.21E-3210102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-2813102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGNSGNDIV APFVLKTYQM VNDPLTDAFI SWGSANNSFI VLDPLHFSHT LLPAFFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEWFLR GQFQLLKNIV RRKQSSNSST KYLVGDQMGD  120
EELVNEIARL RKEQRALEEQ LEGMKKRLET TEKRPQQMMA FLHKVVEDPE ILPRIMLHKD  180
PTRLQFPDKK RRLMISSSSS SPSTTTLTTS FEGDEIEEDA NNRRDFGLNF SSPEVSGPWF  240
LREPEGNLGI PPVPPIDLGI SSNGGERKYL TEMTVEETHP PPPYPFSLFG CGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24310219129Heat shock factor protein 1
5d5v_B2e-24310219129Heat shock factor protein 1
5d5v_D2e-24310219129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818100.0LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463387.11e-175PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV523e-80HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S3CJ611e-174A0A1S3CJ61_CUCME; heat stress transcription factor C-1-like
STRINGXP_008463387.11e-175(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-81heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]