PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010686
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 377aa    MW: 43503.9 Da    PI: 10.0673
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010686genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-1033124199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk  +ps+  +++ l +p++f++ +g  ke s  + l+ ++g +W+v l  +k+ g++++ +  ++F +   ++ g  ++Fk++g+s+f   v +f++
  Cla010686  33 FFKLILPSSIRERK-LKMPRRFIRMFG--KELSSNVLLTVPNGGVWQVGL--EKTNGQIWFNDSLNKFIDYYSIDYGFLLLFKYEGNSSF--QVLIFDT 124
                78888888888887.99******9998..458889***************..************************************99..9999986 PP
2B342.89.2e-14284373698
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                +++ + k++  ++p +f +++ + +  +  + ++  ++g++We+ +  r++  +  +++GW  F ++ +L++gD+vvF+l++r +++ ++++vf+
  Cla010686 284 IQKRNIKKSYAYIPSSFGTKYLSRE--DEIIAIQGgSKGQKWEISC--RGST-TKRMGRGWGVFRRESKLRVGDVVVFELVKRsKNRVMKFTVFS 373
                56777888889**********5443..335666666999*******..5555.55789***********************99899989999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1630124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-1731124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.02432125IPR003340B3 DNA binding domain
SMARTSM010191.0E-933125IPR003340B3 DNA binding domain
PfamPF023622.7E-733124IPR003340B3 DNA binding domain
CDDcd100178.20E-1033123No hitNo description
Gene3DG3DSA:2.40.330.105.2E-17272369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-15273369IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-8278373No hitNo description
PROSITE profilePS5086312.548279375IPR003340B3 DNA binding domain
SMARTSM010196.1E-8280375IPR003340B3 DNA binding domain
PfamPF023628.9E-12283373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEENNGGGEW RSGLRCRHRR FLQPEGTNPP LQFFKLILPS SIRERKLKMP RRFIRMFGKE  60
LSSNVLLTVP NGGVWQVGLE KTNGQIWFND SLNKFIDYYS IDYGFLLLFK YEGNSSFQVL  120
IFDTTTFEIQ YPHHDGMNLG SEVKKSDSII SISSSCGCSD RFIDDEECQY EIHTPKMTRT  180
NLGFNSMKSP GVETRHKSKR KSESCGSEFE SKRCKVEDCI TMEDFDVVKN DPRQVLFNLH  240
YLLFYRQKPA SETRNTSLSG LEMAIREANK TMIKTRNPSF MVIIQKRNIK KSYAYIPSSF  300
GTKYLSREDE IIAIQGGSKG QKWEISCRGS TTKRMGRGWG VFRRESKLRV GDVVVFELVK  360
RSKNRVMKFT VFSSAAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453826.11e-169PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3BY011e-167A0A1S3BY01_CUCME; B3 domain-containing transcription factor VRN1-like
STRINGXP_008453826.11e-168(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-39B3 family protein