PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010713
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 194aa    MW: 21634.2 Da    PI: 6.8045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010713genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17101151255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrdp+      r++lg++++  +Aaka++ a+ +l+g
  Cla010713 101 HFRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTYDSDIDAAKAYDCAAFRLRG 151
                69*******.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-30100160IPR001471AP2/ERF domain
PROSITE profilePS5103223.815101159IPR001471AP2/ERF domain
PfamPF008472.0E-12101151IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21101161IPR016177DNA-binding domain
SMARTSM003803.0E-33101165IPR001471AP2/ERF domain
PRINTSPR003671.2E-12102113IPR001471AP2/ERF domain
CDDcd000183.54E-21109159No hitNo description
PRINTSPR003671.2E-12141161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASSEEFLTI EFITQFLLGD FSDHQTHFPT DSPFHHPIKL EDFFFDSPIP PPRPPESSDN  60
ETKPGEVVDP STPEPDVTEQ VHGSEVEAAV VGVSGGKGRR HFRGVRRRPW GKFAAEIRDP  120
TRKGSRVWLG TYDSDIDAAK AYDCAAFRLR GRKAILNFPL EAGEPDPPAA ADPKRGRGKK  180
WRNVTKPLMA VNEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26100160464ATERF1
3gcc_A4e-26100160464ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-87LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-87LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022989373.11e-103ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1S3BX967e-95A0A1S3BX96_CUCME; ethylene-responsive transcription factor ERF106
STRINGXP_008453871.11e-95(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.15e-25ERF family protein