PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010722
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 315aa    MW: 36057.4 Da    PI: 5.2753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010722genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141156146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46
                     +g+WT+eEde l+d+v+++G+++W++  r  g + Rt+k+c++rw +
        Cla010722 11 KGPWTAEEDEVLIDYVNKFGPRDWSS-LRSKGlLPRTGKSCRLRWVN 56
                     79************************.66667788**********87 PP
2Myb_DNA-binding40.18.7e-1367108346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++E+   +++ +q+G++ W++Ia ++  gRt++++k++w +
        Cla010722  67 KFSADEERVVIELQAQFGNK-WAKIATYLE-GRTDNDVKNFWST 108
                      79******************.*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.397658IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-19959IPR009057Homeodomain-like
SuperFamilySSF466891.16E-279106IPR009057Homeodomain-like
SMARTSM007171.2E-111060IPR001005SANT/Myb domain
PfamPF002495.1E-121156IPR001005SANT/Myb domain
CDDcd001671.01E-111358No hitNo description
PROSITE profilePS5129419.06759114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-1660112IPR009057Homeodomain-like
SMARTSM007179.7E-1164112IPR001005SANT/Myb domain
PfamPF002495.1E-1167107IPR001005SANT/Myb domain
CDDcd001674.45E-967106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MERQKGVVMK KGPWTAEEDE VLIDYVNKFG PRDWSSLRSK GLLPRTGKSC RLRWVNRLQP  60
NLKTGCKFSA DEERVVIELQ AQFGNKWAKI ATYLEGRTDN DVKNFWSTRR KRLERILQTP  120
PQKSQKNKQR SLEPQRLHEL PALEVPSSSS SQLDEQSSAW KDHFENTFQL GNSEMHKMES  180
LSVQSNMLTM ETENQIFGTP TIHMLAPLDP FSHCCISQFA QSPQEIGMFP DCHGLASNHI  240
PSNLQNMFEP GETSETNSSM QFMSSSMPKE QEIVKAESSL EVKNENPYYA TADDCFDDFT  300
ADLFDFFDQS PPSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-26911325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-178LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-178LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022922554.10.0transcription factor DUO1-like
TrEMBLA0A0A0KUD20.0A0A0A0KUD2_CUCSA; Uncharacterized protein
STRINGXP_004161598.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-63MYB family protein