PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010750

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

FAR1

Protein Properties

Length: 257aa MW: 29683.3 Da PI: 6.7269

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010750	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.5	5.4e-29	93	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Cla010750 93 FYNSYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHTHPLSP 180 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-26	93	180	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRIEWNELEF GVDGDSEVVG NSTLVEDSKP LDENETGVSS IERIFDQDRD EKIIQDTSGR 60 NAILDSVPGL PVVQVDEPYV GQEFENEAAA HAFYNSYATR VGFVIRVSKL SRSRRDGTAI 120 GRALVCNKEG YRMPDKREKI VRQRAETRVG CRAMILVRKV NSGKWVVTKF VKEHTHPLSP 180 GKGRRDCIYD QYPNEHDKIR ELSQQLAIEK KRSATYKRHL EVIFEYIEEH NDNLSRKIQH 240 IVDNVKEMES IEQQNHR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022138245.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S3BY81	1e-180	A0A1S3BY81_CUCME; protein FAR1-RELATED SEQUENCE 6
STRING	XP_008453933.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-110	FAR1 family protein