PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010881

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 235aa MW: 26856.4 Da PI: 10.1629

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010881	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.2	3.9e-50	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelv +yL kk+ +++l++ vi+++d+++++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg d++++s+ +++l Cla010881 14 LPPGFRFHPTDEELVLQYLMKKALSSPLPA-AVIPDADVCRFDPWDLPGD---LERERYFFSTREAKYSNGRRSNRATGSGYWKATGIDRRIVSSkENRL 109 79**************************.89***********44...46899******************************99867778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg kktLvfy+g+ p+g++tdWvmheyrl Cla010881 110 VGFKKTLVFYTGKPPNGSRTDWVMHEYRL 138 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-60	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	14	168	IPR003441	NAC domain
Pfam	PF02365	2.7E-26	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MENLTFLKNG VLRLPPGFRF HPTDEELVLQ YLMKKALSSP LPAAVIPDAD VCRFDPWDLP 60 GDLERERYFF STREAKYSNG RRSNRATGSG YWKATGIDRR IVSSKENRLV GFKKTLVFYT 120 GKPPNGSRTD WVMHEYRLVG SPEAPPSTFN DGLSTLNRNW VLCRIFLKKR STRERDEKKN 180 ICKPVFHQFL RTRNGTDLNV APCSSSSGSS GVTEISVNNH QEQEETSSCN SFRKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	12	174	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	12	174	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	12	174	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	12	174	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	12	174	18	174	NAC domain-containing protein 19
3swm_B	1e-50	12	174	18	174	NAC domain-containing protein 19
3swm_C	1e-50	12	174	18	174	NAC domain-containing protein 19
3swm_D	1e-50	12	174	18	174	NAC domain-containing protein 19
3swp_A	1e-50	12	174	18	174	NAC domain-containing protein 19
3swp_B	1e-50	12	174	18	174	NAC domain-containing protein 19
3swp_C	1e-50	12	174	18	174	NAC domain-containing protein 19
3swp_D	1e-50	12	174	18	174	NAC domain-containing protein 19
4dul_A	1e-50	12	174	15	171	NAC domain-containing protein 19
4dul_B	1e-50	12	174	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	4e-94	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	4e-94	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152126.1	1e-152	PREDICTED: NAC transcription factor 25
Swissprot	Q9FY93	8e-94	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0A0KTV6	1e-150	A0A0A0KTV6_CUCSA; NAC domain-containing protein
STRING	XP_004152126.1	1e-151	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-95	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]