PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010890
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 128aa    MW: 14125.2 Da    PI: 6.5079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010890genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.0006336553554
               TS-STCHHHHHHHHHHHHHH CS
        HLH 35 skKlsKaeiLekAveYIksL 54
               s K + a++L +A+eYI+ L
  Cla010890 36 SSKTDTASVLLEAMEYIQFL 55
               7899**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-63569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-53664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDVETMMEQK RSLCSVDESA LTSLTSKRPK TDFSISSKTD TASVLLEAME YIQFLHEQVK  60
VLSAPYLQST PTVLLQELEA CSHSLRSRGL CLVPISYTAG VARSNGADIW APVKTISPKF  120
EKPISPFN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818745e-58LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132615e-58LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454045.11e-77PREDICTED: transcription factor bHLH113-like isoform X2
RefseqXP_008454046.11e-77PREDICTED: transcription factor bHLH113-like isoform X4
SwissprotQ7XJU22e-42BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1S3BX752e-76A0A1S3BX75_CUCME; transcription factor bHLH113-like isoform X4
TrEMBLA0A1S3BYX63e-76A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2
STRINGXP_008454043.12e-76(Cucumis melo)
STRINGXP_004152130.11e-76(Cucumis sativus)
STRINGXP_004156961.11e-76(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.58e-45bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]