PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010914
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 177aa    MW: 20260.1 Da    PI: 10.3172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010914genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19111161256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Cla010914 111 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 161
                59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-17110170No hitNo description
SMARTSM003801.4E-33111174IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-23111168IPR016177DNA-binding domain
PROSITE profilePS5103223.301111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31111169IPR001471AP2/ERF domain
PfamPF008471.2E-13112161IPR001471AP2/ERF domain
PRINTSPR003671.6E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.6E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDNKMQQELN SPHLISNSKS LTDIRTLLSN LILSRQSTNT LDSIFSHCLP STAAPLPEPA  60
LGSSVYLRQR DLVHQFCVEN HHACSSANLH HHPLGISPGY GGFPATVKKK LYRGVRQRHW  120
GKWVAEIRLP QNRMRVWLGT YDTAEAAAYA YDRAAYKLRG EYARLNFPNL KDFFRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20107168163ATERF1
3gcc_A1e-20107168163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-179LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-179LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451936.12e-95PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-41ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3BTG44e-94A0A1S3BTG4_CUCME; ethylene-responsive transcription factor ERF061
STRINGXP_008451936.16e-95(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-41ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]