PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010915
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 178aa    MW: 18987.3 Da    PI: 7.7188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010915genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.3e-092283056
        AP2 30 rfslgkfgtaeeAakaaiaarkklege 56
               r++lg+++tae Aa a+++a+ kl+ge
  Cla010915  2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28
               79***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.144135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15236IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-11235IPR016177DNA-binding domain
PfamPF008471.4E-5228IPR001471AP2/ERF domain
SMARTSM003801.3E-4241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDF RNLGFADCGR LNALKNSVDA  60
KIQAICLKMK KERAKKNGKK SDPKNGAVSG SCSMSSPSPS SAVAEWCWSG EMACSSVVSE  120
DGFWRSENSP PPSSSSSGSA ESSAAAAAVV GEGVCEGYSS LAKMPSFDPD LIWEVLAN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-178LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-178LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022985417.14e-70ethylene-responsive transcription factor ERF061
SwissprotQ9C7W25e-29ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0A0KV161e-63A0A0A0KV16_CUCSA; Uncharacterized protein
STRINGXP_004149763.12e-65(Cucumis sativus)
STRINGXP_004167088.12e-65(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-20ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]