PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011198
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 469aa    MW: 52241.7 Da    PI: 7.6399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011198genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12289334454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + ErrRR+++N++f+ L++llP+      +K +K ++L+ + eY++ L
  Cla011198 289 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSCL 334
                58899********************97.....8**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-16282351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-11285339No hitNo description
PROSITE profilePS5088814.792285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16289352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MFEEHHQLSC LRFLDGFLKE IEEQPCSSSS AAAGSLAQLL FEEYKQLEFS VDDGLVPGLA  60
HKHNDPCLKL ENSQLQTYAS SDAAGIQVGY INSMGMTSIF LGSINGEIEL GFSNVSQVEI  120
QMIISNLVPG DVVAPNFPIM ELPQPSTKLK LIPSPSPNPL SSSSSSLRSL FNLPPWTLFL  180
LAKTLQSPTP EALDEAMTRT ILAVLSSSSS SVHQPLKRLP PSYHMNVKAS AFKKYARVLT  240
PTTTTRLNQN LSTRQSLLKR SFAFMRSLNL MRLRERMPAT SRPTSSQLHH VISERRRREK  300
LNDSFQALKS LLPPGTKKDK GSVLTTTREY MSCLKAQVAE LSRRNQQLEA QLLKSTKEEE  360
KEEANIFPQE ERFRVGISQV QESTSEGQII DLHIATRGES PLTNIVIGVL EFLKQLNNMR  420
VVSMEGNTQL TPSSSSINQL TLRLIIEENE WAKSAFQEAV ERVVSDLAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERRRRE
2294299RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659993.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A1S3BQ940.0A0A1S3BQ94_CUCME; putative transcription factor bHLH041 isoform X2
STRINGXP_008450872.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-50bHLH family protein