PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011239
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 226aa    MW: 25368.2 Da    PI: 5.9653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011239genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151485146
                     TSSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqk 46
                     rg+W+++Ed  l   ++++G+g                           +W+ Ia+ ++ gRt++++k++w++
        Cla011239 14 RGPWSPQEDATLTAFINKHGTGgnwialprkaelpaevaelsptrhqtwRWAVIASQLP-GRTDNDVKNHWNT 85
                     89*********************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-20591IPR009057Homeodomain-like
PROSITE profilePS5129412.993991IPR017930Myb domain
SMARTSM007171.0E-121389IPR001005SANT/Myb domain
PfamPF002494.7E-131485IPR001005SANT/Myb domain
SuperFamilySSF466895.74E-111488IPR009057Homeodomain-like
CDDcd001672.34E-101687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPQ EDATLTAFIN KHGTGGNWIA LPRKAELPAE VAELSPTRHQ  60
TWRWAVIASQ LPGRTDNDVK NHWNTKLKKK FNLFSDPSIP TAVITDPPPC SAAANSLKLH  120
DQEHNININT NFMFSGPPPF ELKHNFEPQY QFPMLNHNNN NPVPELSTSS SSISLPIDQN  180
HLQFSGNGDG SDDAEILQSY YHGIYDQYLY EDHFMEGFDV SNYMGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2342572e-49AC234257.1 Cucumis sativus chromosome 1 BAC clone ccbaa, complete sequence.
GenBankLN6818062e-49LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132562e-49LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135811.14e-81PREDICTED: transcription factor RAX2-like
TrEMBLA0A0A0LZB28e-80A0A0A0LZB2_CUCSA; Uncharacterized protein
STRINGXP_004158458.11e-80(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-33myb domain protein 36