PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla011274

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GeBP

Protein Properties

Length: 397aa MW: 44129.9 Da PI: 4.599

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla011274	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.3	4.2e-37	106	204	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 klfqrlw++eDei lLqG++d+++++g+ + ++ d+ fy+++k++++++++k+qlveK+rrLKkK+++ k++sgk+++f+++hdq +fe+s+kiW Cla011274 106 KLFQRLWTDEDEIELLQGFLDYTMQRGTtHHHQnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWS 204 579***********************633446**************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.7E-35	108	204	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDPRNDAVFP DEDLEDDEES LDDEDDDEEE EELNDDPSPS TSSAGAVPVP SVSATVTVAT 60 PAVSVVPPPS IVSISSADLI RQRLETATAE PLTLQGEKKP LDESRKLFQR LWTDEDEIEL 120 LQGFLDYTMQ RGTTHHHQND TALFYDQIKS KLQLDFNKNQ LVEKLRRLKK KYRNVIGKIS 180 SGKDFNFKSP HDQATFEISR KIWSNTGRIG VDDNALDDDE PAAPTPYASY MDHRNEEMMA 240 NCAEKKPTPT PKSRKRTRPG SGIRMDVPRS SNENLSKEKN STYHNNTNNN ENVNNVAVAG 300 LIEETVRSCL SPLFKELLNT SMGGGLCGGS RGFSGLASHP IPLSFGGASI NFGGGGEMAD 360 ERWRKQQILE LEVYSKRLEL VQEQIKTALE DLRSMGG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDPRNDAVFP DEDLEDDEES LDDEDDDEEE EELNDDPSPS TSSAGAVPVP SVSATVTVAT  60
PAVSVVPPPS IVSISSADLI RQRLETATAE PLTLQGEKKP LDESRKLFQR LWTDEDEIEL  120
LQGFLDYTMQ RGTTHHHQND TALFYDQIKS KLQLDFNKNQ LVEKLRRLKK KYRNVIGKIS  180
SGKDFNFKSP HDQATFEISR KIWSNTGRIG VDDNALDDDE PAAPTPYASY MDHRNEEMMA  240
NCAEKKPTPT PKSRKRTRPG SGIRMDVPRS SNENLSKEKN STYHNNTNNN ENVNNVAVAG  300
LIEETVRSCL SPLFKELLNT SMGGGLCGGS RGFSGLASHP IPLSFGGASI NFGGGGEMAD  360
ERWRKQQILE LEVYSKRLEL VQEQIKTALE DLRSMGG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135666.2	0.0	PREDICTED: mediator-associated protein 1
Swissprot	F4K5T4	2e-90	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A0A0M1Q3	0.0	A0A0A0M1Q3_CUCSA; Uncharacterized protein
STRING	XP_004166334.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-67	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]