PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011292
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 317aa    MW: 34143.6 Da    PI: 6.2395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011292genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10167211554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Cla011292 167 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 211
                99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-15160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-11160216No hitNo description
PROSITE profilePS5088816.526162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7167211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAGIPSEGLG DDFFEQILAV PPSYGGAGGG DMVSMPMGLQ LGSGGGGGGG GGGMGMPLGL  60
NLEQGFLRQE RYREELDGHN NNTTNNASSS STASSGITER DSSMQHMTNL FPTFGHLQTQ  120
QLRPPPPLHL HQPFHNQTTP MTVSAVPQPP QVRPRVRARR GQATDPHSIA ERLRRERIAE  180
RMKALQELVP SCNKTDRAAM LDEIVDYVKF LRLQVKVLSM SRLGGAGAVA QLVADVPLSS  240
VEGEGIESGN NQHAWEKWSS DGTEQQVAKL MEEDVGAAMQ FLQSKALCIM PISLASAIFR  300
THQADPQILV KPEMNTP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-108LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-108LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450748.10.0PREDICTED: transcription factor UNE12-like isoform X2
SwissprotO227682e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S3BPW10.0A0A1S3BPW1_CUCME; transcription factor UNE12-like isoform X2
STRINGXP_008450747.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]