PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011345
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 258aa    MW: 28832.2 Da    PI: 5.4654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011345genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv++++q G g+W++ +++ g+ R++k+c++rw +yl
        Cla011345 15 KGPWTAREDAILVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding537.7e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
        Cla011345  68 RGNITADEDDLIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.871062IPR017930Myb domain
SuperFamilySSF466891.57E-2912109IPR009057Homeodomain-like
SMARTSM007175.6E-121464IPR001005SANT/Myb domain
PfamPF002491.2E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-231669IPR009057Homeodomain-like
CDDcd001672.10E-91762No hitNo description
PROSITE profilePS5129426.41663117IPR017930Myb domain
SMARTSM007176.3E-1667115IPR001005SANT/Myb domain
PfamPF002495.1E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2670117IPR009057Homeodomain-like
CDDcd001671.74E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRTSSCCSK GGLHKGPWTA REDAILVNYI QQNGEGHWRA LPKKAGLLRC GKSCRLRWMN  60
YLRPNIKRGN ITADEDDLII KLHSLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKRLAIT  120
KDNAGETKKE NIITENGETS NTRKPTGVSP FCNDDNSSNG MASRVPLSSG NPCGGKGESD  180
QLAVNGDEEI QKVKGREELE ESGDIFGGCE VLYKESLWNC STNGERTDEI EDDSYQQLLN  240
LQGEDYIQLE SFIDYFLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818958e-65LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132638e-65LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437429.11e-154PREDICTED: transcription factor WER-like
TrEMBLA0A1S3AU001e-152A0A1S3AU00_CUCME; transcription factor WER-like
STRINGXP_008437429.11e-153(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-63myb domain protein 5