PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011510
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 247aa    MW: 28733.7 Da    PI: 7.0045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011510genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1179129355
                HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ + +++Lr+llP       ++K s  +   ++v+YI+++q
  Cla011510  79 IIHRDVERQRRQEMSTLYSTLRSLLPLeY---LKGKRSICDHMHETVKYIQHMQ 129
                5699***********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1374146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-975133No hitNo description
PROSITE profilePS5088813.17376128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1080147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-880129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-582134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MELECIEFPF PFDQADELFP LPSLTPIDLS VSQPPLICSK NKNDKNASEK PKNNRRRKSP  60
NTSDDIEDEN PNEHKKKKII HRDVERQRRQ EMSTLYSTLR SLLPLEYLKG KRSICDHMHE  120
TVKYIQHMQS KIQKLTNKRD ELKKDIEDDS NISTIETLNS SKRDCVVVKP RSGGFQILLD  180
TATQHRLPLS NLLKFLLTER LEIISCHSTK INDRFLHTIE SEAIDIGTID VSELQHKLTN  240
LEYFPLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15577RRKSPNTSDDIEDENPNEHKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295841.11e-137transcription factor bHLH118-like
TrEMBLA0A0A0KMQ41e-136A0A0A0KMQ4_CUCSA; Uncharacterized protein
STRINGXP_004164316.11e-136(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-38bHLH family protein