PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012155
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 256aa    MW: 28879.7 Da    PI: 6.3119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012155genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.44.9e-112361248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
        Cla012155  2 IIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 36
                     5788899****.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0057138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-15137IPR009057Homeodomain-like
CDDcd001677.94E-7136No hitNo description
PROSITE profilePS5129419.909140IPR017930Myb domain
SuperFamilySSF466891.09E-9241IPR009057Homeodomain-like
PfamPF002499.7E-10236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MIIHLQALLG NKWAAIASYL PQRTDNDIKN YWNTHLKKKL KSAFEDHNNS PHNSKASDHS  60
TTSEFFSKGF FNDSSKRSFD FDSASSSSAA SCFGPNRAST ASSSSSTYYS SAENISRLLE  120
GWMRSSPKKN DDNNNENLFH FHEKQSHDNG DSSMVSIQGL EPKTEQDGSD GVALRKEIKS  180
SIVSPKNLNN DDNNFDVGKM MKKKMSYESC ENYDNIKQNR SENNNQNNPP LSFLEKWLLD  240
DTAVQVEEMM ALSPMF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541LKKKLKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818781e-170LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132621e-170LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455771.11e-125PREDICTED: myb-related protein 306
RefseqXP_011653837.11e-125PREDICTED: myb-related protein 306
TrEMBLA0A1S3C1M31e-124A0A1S3C1M3_CUCME; myb-related protein 306
STRINGXP_008455771.11e-124(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82033145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-29myb domain protein 60